This is just a simple wrapper around the API from BioMart, but I found existing packages were not quite sufficent for what I was wanting to do.

Here you can simply get the list of all genes and perform other biomart functions such as mapping between human and mouse.

It is available under the GNU General Public License (Version 3).

Please post questions and issues related to sci-loc2gene on the Issues section of the GitHub repository.

Running sci-biomart

  1. Install sci-biomart (Installing)

  2. View examples

  3. Look at CLI examples

Extending sci-biomart

  1. Make a pull request on github.

Citing sci-biomart

Sci-loc2gene can be cited as in References, where we also provide citations for the used tools (e.g. numpy).

Running sci-biomart