References

Python libraries

sci-biomart is designed for Python >=3.6 and requires the following libraries, which will be automatically installed:

Library

Version

Reference

Ensembl Biomart

Release 25

Sarah E Hunt, William McLaren, Laurent Gil, Anja Thormann, Helen Schuilenburg, Dan Sheppard, Andrew Parton, Irina M Armean, Stephen J Trevanion, Paul Flicek, Fiona Cunningham, Ensembl variation resources, Database Volume 2018, doi:10.1093/database/bay119

NumPy

>= 1.9.0

Harris, C.R., Millman, K.J., van der Walt, S.J. et al. Array programming with NumPy. Nature 585, 357–362 (2020). DOI: 0.1038/s41586-020-2649-2

tqdm

>= 4.31.0

https://zenodo.org/badge/DOI/10.5281/zenodo.595120.svg

pandas

>= 1.0.3

https://zenodo.org/badge/DOI/10.5281/zenodo.3715232.svg

sciutil

>= 1.0.3

ToDo

We strongly encourage you to cite the other python packages and Ensembl biomart