Data processing and download for DNA methylation and RNA¶
Annotate samples in KIRP and KIRC as FH-deficient & look at DNA methylation¶
Essentially we'll perform 5 steps:
1) Download data from TCGA
2) Find index of FH gene, ensembl ID ENSG00000091483
3) Visualise FH across samples
4) Annotate cases as FH deficient
5) Map those patients to their DNA methylation & investigate that.Download the data¶
We use the scidat package to download and annotate the data from TCGA.
Download metatdata from TCGA. For this program to work you need to first go to: https://portal.gdc.cancer.gov/ and select the files to download.
In this example, I chose my data by using the following steps:
1. Navigate to `Exploration` tab
2. Selected `kidney` as the Primary Site
3. Selected `solid tissue normal` and `primary tumor` for my Sample Type (823 cases)
4. Clicked `View Files in Repository`
5. **OPTIONAL**: download the mutation information --> select `Mutations` tab and click `JSON` to download mutation data
Since I'm only interested in RNAseq count data and Methylation beta values, I filter my files to only include these two types of files.
6. Selected `RNA-seq` as my Experimental Strategy
7. Selected `HTSeq - Counts` in Workflow Type
8. Clicked `Add all files to cart` (945 files, 815 cases)
Now I navigated to my cart which had 945 files in it. Since it is recomended to use th GDC-data transfer tool (which scidat uses) I only download the manifest and the metadata for my files of interest.
Before proceeding, look at how much space the files will need (e.g. for me this is 117GB) make sure the computer you are downloading on has that space available.
Download:¶
13. `Biospecimen`
14. `Clinical`
15. `Sample Sheet`
16. `Metadata`
17. Click the `Download` button and select `Manifest`
Lastly, move all these files to a new empty directory ~/Documents/TCGA_data_download_scidat/.
Unzip the Clinical folder and delete the zipped version.
Make a new directory in ~/Documents/TCGA_data_download_scidat/ called downloads (we'll use this below)
Get GDC Data Transfer Tool¶
If you haven't already got the GDC transfer tool, you'll need to download this, follow the instructions from TCGA on how to do this: https://gdc.cancer.gov/access-data/gdc-data-transfer-tool
Move the downloaded GDC transfer tool to the same directory you put your manifest file in i.e. ~/Documents/TCGA_data_download_scidat/ from before.
Now we're ready to download the files and annotate them with the data we downloaded.
Run download script below¶
The script below assumes you have put the files from above in ~/Documents/TCGA_data_download_scidat/ and that your gdc-client is executable.
If you are using a windows machine (or put your files in a different folder you'll need to rename that directory).
Before running the script below you will need to make sure you have edited the path to the manifest file, and the gdc_client to be located where you placed them on your computer and with their proper names (e.g.
In [ ]:
from scidat import Download
from scidat.api import API
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
from statannot import add_stat_annotation
# meta_dir = '~/Documents/TCGA_data_download_scidat/'
meta_dir = '' #Whatever the data directory is
manifest_file = f'{meta_dir}/manifest.tsv'
gdc_client = f'{meta_dir}./gdc-client'
download_dir = f'{meta_dir}downloads/'
clinical_file = f'{meta_dir}clinical.tsv'
sample_file = f'{meta_dir}gdc_sample_sheet.2020-04-07.tsv'
manifest_file = f'{meta_dir}gdc_manifest_20200402_003828.txt'
processed_dir = f'{meta_dir}processed/'
# scidat spits the manifest file into submanifests so that we can make multiple calls to TCGA simulateously.
# This speeds up the download process. Note, it will use up more of your computers' processing so if you are worried
# just set the max_cnt to be more than the number of files in your manifest e.g. 100000000
download_dir = f'{meta_dir}downloads/'
download = Download(manifest_file, download_dir, download_dir, gdc_client, max_cnt=100000000)
In [ ]:
"""
----------------------------
RUN Download
----------------------------
Only run this box if you havn't already downloaded the data
"""
download.download()
# Unzip the files and copy them to another directory
download.copy_downloads_to_new_dir(processed_dir)
In [2]:
# Download dir is where we have unzipped the downloaded data to
api = API(manifest_file, gdc_client, clinical_file, sample_file, download_dir=processed_dir, meta_dir=meta_dir,
max_cnt=1, requires_lst=['counts'])
# Build the annotation
api.build_annotation()
# Build the RNAseq dataframe
api.build_rna_df(processed_dir)
# Now we need to access biomart to be able to mix between the two (i.e. one is annotated with gene symbol the other has ens id)
df = api.get_rna_df()
-------------------------------------------------------------------------------- Clinical dataframe -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- submitter_id project_id age_at_index gender race vital_status \ 0 TCGA-CJ-4885 TCGA-KIRC 64 male white Alive 2 TCGA-A3-3319 TCGA-KIRC 70 male white Alive 4 TCGA-BP-4998 TCGA-KIRC 49 male asian Alive 6 TCGA-CZ-4857 TCGA-KIRC 56 male white Dead 8 TCGA-A3-3311 TCGA-KIRC 57 male not reported Dead tumor_stage days_to_death 0 stage iv -- 2 stage i -- 4 stage i -- 6 stage iv 1432 8 stage i 1191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Sample dataframe -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- File ID \ 0 2e60929b-be4b-41df-ba2d-ffb12068cea7 1 e5d0d9de-d67e-40c9-a33a-80ac46ad5c3d 2 474bc264-d24c-4133-958a-31cc60f02e37 3 7161ab0d-620e-435f-9c69-74e3c63b1b6a 4 e829dfb2-2113-4471-b4cc-72a0e77bcd89 File Name Data Category \ 0 jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.T... DNA Methylation 1 jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.T... DNA Methylation 2 jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.T... DNA Methylation 3 jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.T... DNA Methylation 4 a73b7250-3437-4279-b3e1-1add31d7b3fc.htseq.cou... Transcriptome Profiling Data Type Project ID Case ID Sample ID \ 0 Methylation Beta Value TCGA-KIRP TCGA-P4-A5ED TCGA-P4-A5ED-01A 1 Methylation Beta Value TCGA-KIRC TCGA-BP-5189 TCGA-BP-5189-01A 2 Methylation Beta Value TCGA-KIRC TCGA-A3-3367 TCGA-A3-3367-01A 3 Methylation Beta Value TCGA-KIRC TCGA-B0-5113 TCGA-B0-5113-01A 4 Gene Expression Quantification TCGA-KIRC TCGA-CJ-5680 TCGA-CJ-5680-11A Sample Type 0 Primary Tumor 1 Primary Tumor 2 Primary Tumor 3 Primary Tumor 4 Solid Tissue Normal --------------------------------------------------------------------------------
In [3]:
"""
--------------------------------------------------------
Add annotation to RNAseq dataframe & save Tissue counts as files.
--------------------------------------------------------
"""
# Lastly let's add some gene annotation information
"""
Annotations were generated as such:
hb = SciBiomartApi()
results_df = hb.get_human_default()
results_df = hb.sort_df_on_starts(results_df)
hb.save_as_csv(results_df, '../supps/human_')
"""
gene_id = 'ensembl_gene_id'
gene_name = 'external_gene_name'
gene_ids = []
for g in df.id.values:
gene_ids.append(g.split('.')[0])
df[gene_id] = gene_ids
# Remove data that were not able to be annotated to gene names (i.e. these are usually the genes which are "unknown")
annot_df = pd.read_csv('supps/human-hsapiens_gene_ensembl-GRCh38.p13.csv')
# Merge the two
annot_df.set_index(gene_id)
annot_df[gene_id] = annot_df[gene_id].values
df = df.merge(annot_df, on=gene_id, how='inner')
# Take the largest of any that don't have a name
df = df.dropna(subset=[gene_name])
df = df.groupby([gene_id]).max()
# Note if we have duplicate results for a given condition we only take one of them.
# Now we want to add our methylation data to our dataframe, here we're being very strict and dropping any null
# rows
In [4]:
def add_meth_file(df, filename):
# Make a dictionary from the key being the gene id to the value (width)
mapping = {}
# Keep the max value
file_df = pd.read_csv(f'{meth_dir}{filename}')
meth_values = file_df.values[:,1]
for i, g in enumerate(file_df['id'].values):
if not mapping.get(g):
if g == 'PFKFB1':
print(meth_values[i], i)
mapping[g] = meth_values[i]
else:
mapping[g] = meth_values[i] if meth_values[i] > mapping[g] else mapping[g]
if g == 'PFKFB1':
print(i)
# Now we want to iterate through the genes in the df and add them
meth_values_ordered = []
fname = file_df.columns[1]
name = api.annotate.annotated_file_dict[fname]['label']
for g in df[gene_name].values:
meth_values_ordered.append(mapping.get(g))
df[name] = meth_values_ordered
return df
In [5]:
import os
# Now we want to add our chipseq data from Encode
meth_dir = f'{meta_dir}minified_meth/'
files = os.listdir(meth_dir)
meth_files = []
for f in files:
if '.txt' in f and '.swp' not in f:
meth_files.append(f)
meth_files.sort()
meth_df = pd.DataFrame()
meth_df[gene_name] = df[gene_name].values
for filename in meth_files:
api.u.dp(["Adding", filename])
df = add_meth_file(df, filename)
-------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8323-01A-21D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950923962673029 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8324-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94526956211726 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8325-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.95849523202144 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8327-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7857191981814671 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8328-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9551698646632673 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8329-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.92633348581972 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8330-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9448812008583052 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8331-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.585671280059369 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8333-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.956850000527146 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8334-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.942105577421592 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8335-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.938431473155925 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8336-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9253131159821868 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8337-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9519419772346128 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8338-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950225325344458 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8339-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949387040688797 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8341-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954892568004182 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8342-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939149439739705 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8343-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.95220187753636 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8344-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948365656128601 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8345-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9573276153154392 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KL-8346-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.955292037400102 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KM-8438-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8911676289844541 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KM-8439-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9438185504169392 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KM-8440-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.956069483481528 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KM-8441-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.718402832761106 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KM-8442-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.946635003121103 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KM-8443-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954733153404694 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KM-8476-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939076725989894 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KM-8477-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.93652441592776 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8418-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9179828934208358 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8419-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6666083114236779 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8422-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.930899071890497 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8423-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.95950279777862 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8424-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9119767200084772 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8425-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952752130812729 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8426-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.953930760871314 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8427-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9360010888891128 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8428-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951214582205994 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8430-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951725137530129 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8431-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940632186778964 13338 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jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8435-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.962054309077964 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8436-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940792262757704 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KN-8437-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.934701830149381 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KO-8403-01A-11D-2312-05.gdc_hg38.txt 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jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KO-8413-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954473265215163 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KO-8415-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.945349090132062 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KO-8416-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.953526903421962 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.1.lvl-3.TCGA-KO-8417-01A-11D-2312-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.935616162227752 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KICH.HumanMethylation450.2.lvl-3.TCGA-KM-8639-01A-11D-2398-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9193738042713148 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-AK-3425-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9218684143432008 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-AK-3428-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9184544462001608 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-AK-3431-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.728631735752741 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-AK-3434-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9403262220500268 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-AK-3440-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.936854107151149 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-AK-3445-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.953280608107794 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-AK-3450-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.820561929344152 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-AK-3453-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.93305786899446 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-AK-3454-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.93593338066971 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-AK-3461-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8749193519084241 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4688-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.620085989822516 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4688-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9257782731960228 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4690-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.933501601818298 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4690-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.937701807505894 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4691-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9356439300814772 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4691-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9193898300027592 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4694-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9071785249246792 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4694-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940379126421744 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4696-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.304329263193998 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4696-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9388927205686852 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4699-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9253211297252 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4699-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939279078215489 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4701-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.918787288642968 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4701-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.838848776347812 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4703-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9315440814435768 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4703-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.926104724028226 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4707-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.942157327026534 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4707-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.931985613610052 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4713-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.887322006514143 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4713-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.899765531646159 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4714-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9306220774421508 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4714-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.934754657823683 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4718-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9353824436010792 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4718-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.924945930020525 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4813-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9412827468355268 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4813-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927109938025877 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4814-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.941747044272919 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4814-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94140398410491 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4817-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.928133168470657 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4817-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9258699669081422 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4819-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8860518102374599 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4819-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8848578641051251 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4828-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.931355302089818 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4828-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.920708146221025 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4841-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9218851938407472 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4841-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.923114187840897 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4843-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9295290509350672 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4843-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927205209376788 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4844-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940912469666771 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4844-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.92195715837468 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4848-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927084203562083 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4848-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9362500105618492 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4849-01A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9411917598433142 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B0-4849-11A-01D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943475561953378 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B2-4101-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9267662001519792 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.1.lvl-3.TCGA-B8-4622-01A-02D-1275-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9136440031878692 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-6D-AA2E-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9024134203282992 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-A3-A8CQ-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.749983046617174 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-A3-A8OU-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.716509565888255 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-A3-A8OV-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.936051653062223 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-A3-A8OW-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.936968115651192 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-A3-A8OX-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.876403797343231 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-B8-A7U6-01A-12D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.789943512400292 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-G6-A8L6-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9458036431195171 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-G6-A8L7-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.918251832304673 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-G6-A8L8-01A-21D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.610096715741999 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-MM-A84U-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9036235418141892 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.10.lvl-3.TCGA-T7-A92I-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.929698599691807 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.11.lvl-3.TCGA-B8-A8YJ-01A-13D-A39G-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8446474642356742 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3357-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.942098364014606 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3357-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9476559430111272 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3367-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9450408370513028 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3367-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.934322535901644 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3370-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.91040286441862 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3370-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.862093760922078 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3373-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8915202273086039 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3373-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8670916700695279 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3376-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952036867315444 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3376-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9509425575024192 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3385-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.647175559301985 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-A3-3385-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.886037973093266 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-4823-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949442470815756 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-4823-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9344018194390592 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-4827-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.921331792993344 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-4827-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.908304809190141 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-4842-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9055462457710358 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-4842-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8060366765818259 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-4945-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.923766685889784 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-4945-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8459432666835849 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5083-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9557522660815392 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5092-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8667351255972641 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5092-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8776023963649658 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5094-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950615307954838 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5094-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954216033658829 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5095-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927860715139111 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5095-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950103437385728 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5096-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8838239895515541 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5096-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.917783976127615 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5097-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.928549879844764 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5097-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8897446877429549 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5098-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.921916879790804 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5098-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8563759653310942 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5099-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.936982886651718 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5100-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9448973782359168 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5100-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.947419954182209 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5102-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.663548650472229 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5102-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8810671738295759 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5104-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.917352567035121 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5104-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.803181275515571 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5106-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.944288983258008 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5106-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943966851412417 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5107-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927164182216448 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5107-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.867635506861883 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5108-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9454677408881909 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5108-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9384197441905452 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5109-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9310300179642808 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5109-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94934921430758 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5110-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8704117647998929 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5110-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940806612416186 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5113-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8443570764876079 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5113-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.879097632128128 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5115-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94205148816163 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5115-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.947125475702248 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5116-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.960018473718114 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5116-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.944172257276928 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5117-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954006289126813 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5117-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.960697970804048 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5119-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.855646023140765 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5119-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.897513459327805 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5120-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.92645128942058 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5120-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8730507084151751 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5121-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951569707232132 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B0-5121-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949365908728114 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B8-5158-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.944848393787258 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B8-5159-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9476480069596752 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B8-5162-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9501726949882868 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B8-5163-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8762195355560508 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B8-5164-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.946471545451565 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-B8-5165-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9548003493255748 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4177-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951977595310525 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4177-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9468753877254972 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4760-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9615803243874672 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4760-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9560031692976608 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4782-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.737275753495644 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4782-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8359885587294829 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4795-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.89587026486706 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4795-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.887314126695559 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4801-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.959495570972831 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4801-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9468630883358 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4993-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940873128969294 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-4993-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94100026089574 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-5010-01A-02D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951852971539498 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-5010-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954897075666132 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-5168-01A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.955584048210408 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.2.lvl-3.TCGA-BP-5168-11A-01D-1418-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.960822638615614 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5169-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.913757864282734 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5169-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951845412045982 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5170-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.961398087191234 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5170-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9429783110095492 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5173-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.959709712171069 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5173-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94414289070591 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5174-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.727089589349695 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5174-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8437012714695 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5175-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948738130512464 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5175-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951637419099046 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5176-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7807773765330601 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5177-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7146881446303689 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5177-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8553638213263441 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5178-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.960185863906225 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5178-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9509542830351472 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5180-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958290583339318 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5180-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9543298201461452 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5181-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.924166787191411 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5181-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.841755069432805 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5182-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9514455724442192 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5182-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950078759127073 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5183-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.963281964156958 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5183-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.946566622931471 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5184-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.962687883755843 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5184-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949048356876894 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5185-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9561516972622508 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5185-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.963133325946323 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5186-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.902441963476396 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5186-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8491413805478671 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5187-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949843423713416 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5187-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.965040828169048 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5189-01A-02D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9646593437095792 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5189-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.959613987581584 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5190-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.957829759158111 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5190-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952855165583023 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5191-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.966525635627132 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5191-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9510040949332 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5192-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.960357827496482 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5192-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952009373707111 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5194-01A-02D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.957530076199918 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5194-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952769691690362 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5195-01A-02D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.964370498235034 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5195-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950337566004146 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5196-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.965258274111711 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5196-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.959765753792134 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5199-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9577755629246228 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5199-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.956484906253914 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5200-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9596339796286852 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5200-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954639397322704 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5201-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.96320981104204 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5201-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.935893795807812 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5202-01A-02D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.969264995659626 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-BP-5202-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.956365205704996 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4869-01A-02D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9514004865799972 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4869-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.942376084876266 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4882-01A-02D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9605113833867328 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4882-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9508766074373092 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4897-01A-03D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.867422631858077 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4897-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.902157525594218 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4901-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949566942075265 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4901-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.955256778345924 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4902-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9562685342389792 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4902-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.963799048692683 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4903-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949489535183444 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4903-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954612691490953 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4904-01A-02D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7136769204722572 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4904-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.832099058435141 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4905-01A-02D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6231389368850601 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4905-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.844510911519265 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4907-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948154782805128 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4907-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.944886077846504 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4908-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950920467022938 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4908-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.969139543980034 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4912-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949933267452138 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4912-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958493461206376 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4913-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7943453513527359 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4913-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8705664430670609 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4916-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8890198301626571 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4916-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.924883297732962 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4918-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.937177090886538 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4918-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.962229094333782 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4920-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7563438602948751 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4920-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.921279722638018 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4923-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9482573721200508 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CJ-4923-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.962302317162934 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CZ-4853-01A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9568871405460458 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CZ-4853-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9583859018166828 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CZ-4856-01A-02D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.672064032573693 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CZ-4856-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.845513028566055 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CZ-4859-01A-02D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.489673092844649 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.3.lvl-3.TCGA-CZ-4859-11A-01D-1424-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8210329295221579 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-AK-3458-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9669307370201208 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4698-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.802537682370445 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4698-11A-02D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.95606353074382 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4706-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948168390045775 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4710-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.928967798190392 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4710-11A-02D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9016987952551192 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4712-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.941732357316679 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4712-11A-02D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.963584475866716 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4810-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9538422422443792 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4810-11A-02D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9605689285012612 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4811-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952357097221852 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4815-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.925020140879666 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4815-11A-02D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.961415241326263 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4816-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958380108619177 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4816-11A-02D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9619334218275278 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4818-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.790148673747917 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4818-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.864844783421809 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4821-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8115225571850442 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4821-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8479733865405609 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4852-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.916322988038567 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-4852-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8840276866226969 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-5399-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9673680395245172 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-5400-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.784282671195766 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-5400-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.868148273716195 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-5402-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.962229247880554 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B0-5402-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954494377236782 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B4-5377-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8841968389670071 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-B8-4621-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.963104064372996 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-BP-4770-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.559968243508141 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-BP-4770-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.81202033433127 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-4863-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.858731920799955 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-4863-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.915121692671784 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-4864-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950230660336455 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-4864-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.957523635751478 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-4865-01A-02D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.767157428997871 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-4865-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.877511148524282 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-4866-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.925802206195732 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-4866-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.88244532535465 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5451-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958708282282156 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5451-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.967688395664432 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5452-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9439135958008829 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5452-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.959951660914307 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5453-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.967314787312718 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5453-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9570896265768442 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5454-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9636336278444332 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5454-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9538087900920028 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5455-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9639663941275428 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5455-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.971360468354005 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5456-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950465949579323 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5456-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958758614796108 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5457-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9582223759418008 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5457-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.961459725914788 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5458-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.963372302051037 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5458-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.962446597976412 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5459-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949372742990077 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5459-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951626799634264 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5460-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950903300078856 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5460-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958010179127903 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5461-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9561733355245527 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5461-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.966007205352846 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5462-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.959780384447811 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5462-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9616188732998472 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5463-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958320319078866 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5463-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9596461329601372 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5464-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.95797061239362 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5464-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9662109331600692 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5465-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.776838338659263 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5465-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.866978574361479 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5466-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.960697563361375 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5467-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.896839650540165 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5467-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.826346242294056 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5468-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.968177601727356 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5468-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9515530123464 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5469-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.965072008680016 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5469-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.955306325231701 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5470-01A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.902412226895524 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.4.lvl-3.TCGA-CZ-5470-11A-01D-1500-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8504123533524409 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-A3-3358-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.653092625790427 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-A3-3387-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948440845280896 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-4700-01A-02D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.915337274350915 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5690-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.89675959528172 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5691-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6799059099604671 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5692-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9132943903831128 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5693-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6684417597764171 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5694-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939839673472568 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5695-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8236412524926371 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5696-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.923045709999582 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5697-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.942873372565774 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5699-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9508165706523648 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5700-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940462012865968 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5701-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.928635129571564 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5702-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.90527816567473 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5703-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.945643345109642 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5705-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.881044487329091 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5706-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9451174035173442 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B0-5709-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7946329081061329 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B2-5633-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927201959875862 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B2-5633-01B-04D-A27A-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9176900641787952 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B2-5635-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9416782594406 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B2-5635-01A-01D-A27A-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.936458315627896 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B2-5635-01B-04D-A27A-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948657396506448 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B2-5639-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.938752616319402 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B2-5641-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9444796858876948 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B8-5549-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.938282632342532 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B8-5550-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9351850728531852 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B8-5551-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.81463216558337 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-B8-5553-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.926083771490576 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5671-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9397423010139352 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5672-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.937592162349392 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5675-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.90142851611558 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5676-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9594906807339172 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5677-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927188639281549 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5678-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9520094106553242 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5679-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.956861360909855 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5680-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6970151400426979 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5681-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9270687708102672 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5682-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.957199294991538 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5683-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9199003738976428 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5684-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.91818498338215 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CJ-5689-01A-11D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949848135930042 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CW-5581-01A-02D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927648085072326 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CW-5583-01A-02D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.897444560552842 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CW-5585-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948593512234498 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CW-5587-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.841469429419579 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CW-5588-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8789493376835391 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CW-5589-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.955483965934277 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CW-5590-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940497057453353 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-CW-5591-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.962606041362428 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-DV-5565-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.95379894429907 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-DV-5566-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.864157262580432 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-DV-5567-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6815697514278231 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-DV-5568-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939532554477204 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-DV-5569-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.660171706781591 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-DV-5573-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.953688895545288 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-DV-5574-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9546708443229128 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-DV-5575-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6949762256443399 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.5.lvl-3.TCGA-DV-5576-01A-01D-1536-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.897991449577 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B0-5698-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9532246692581172 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B0-5710-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9661876707824252 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B0-5711-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9491912434605492 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B0-5711-11A-01D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9592020349718192 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B0-5712-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.658973959920732 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B0-5712-11A-01D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.813870295044679 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B0-5713-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7025799185113311 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B0-5713-11A-01D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8970913302235709 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B4-5832-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.959554743438 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B4-5834-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9616718715871893 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B4-5835-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.760846850535125 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B4-5836-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.722379155162294 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B4-5838-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9560356544255258 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B4-5843-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9547063046894492 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B4-5844-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.723312198112591 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B8-4146-01B-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.89709675607427 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B8-4153-01B-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.956253641045142 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B8-5545-01A-01D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9500526504024192 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-B8-5552-01B-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8611148738285049 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CJ-5686-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9040366615502 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CJ-6027-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.95230838191694 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CJ-6028-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952058837997142 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CJ-6030-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9453586444361448 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CJ-6031-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94628262762791 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CJ-6032-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7221358831434851 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CJ-6033-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.922962307670795 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CW-5580-01A-01D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950664539678836 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CW-6088-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9587116267025648 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CW-6090-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9546863411753091 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CW-6093-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.934294429924548 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CW-6097-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.955348717024717 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5982-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.71595235754912 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5984-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9589318699378452 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5985-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.96139629544391 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5986-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.962198062902728 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5987-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.95424472300883 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5988-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950813268887794 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5989-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.95139280963998 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-EU-5904-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7011223217900949 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-EU-5905-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951003069937472 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-EU-5906-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.945226266165596 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-EU-5907-01A-11D-1670-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958773647722704 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-B8-A54D-01A-21D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949859408817143 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-B8-A54E-01A-11D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.90264149575053 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-B8-A54F-01A-11D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.604745648408809 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-B8-A54G-01A-11D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940966543593086 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-DV-A4VX-01A-11D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9363595917712352 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-DV-A4VZ-01A-11D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.944002151383014 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-DV-A4W0-01A-11D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951266038730702 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-DV-A4W0-05A-11D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.913306512845771 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-MM-A563-01A-11D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940281979796198 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-MM-A564-01A-11D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.933553758858216 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.7.lvl-3.TCGA-MW-A4EC-01A-11D-A264-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7182872736991001 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.8.lvl-3.TCGA-B2-3924-01A-02D-A27A-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9150045216997208 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.8.lvl-3.TCGA-B2-3924-01B-03D-A27A-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.935944241942507 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.9.lvl-3.TCGA-A3-A6NI-01A-11D-A33L-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9468202144258432 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.9.lvl-3.TCGA-A3-A6NJ-01A-12D-A33L-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7341069157713929 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.9.lvl-3.TCGA-A3-A6NL-01A-11D-A33L-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.826414358434766 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.9.lvl-3.TCGA-A3-A6NN-01A-12D-A33L-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.937923123858432 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.9.lvl-3.TCGA-B8-A54H-01A-11D-A33L-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.678664871143592 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.9.lvl-3.TCGA-B8-A54I-01A-21D-A33L-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.928300914304333 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.9.lvl-3.TCGA-B8-A54J-01A-11D-A33L-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9422064348472592 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.9.lvl-3.TCGA-B8-A54K-01A-11D-A33L-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9428868544409448 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.9.lvl-3.TCGA-G6-A5PC-01A-11D-A33L-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9067213039164308 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRC.HumanMethylation450.9.lvl-3.TCGA-GK-A6C7-01A-11D-A33L-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6380023075901391 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-B1-5398-01A-02D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.89733210097212 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-B9-5155-01A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.957728827809059 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-B9-5156-01A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948596250000695 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5875-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9334008485695408 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5875-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8001327694313342 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5876-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.96151548654726 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5876-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9535151862805592 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5877-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.945821305321212 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5877-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951819360871363 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5878-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9524953697340328 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5878-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.822730706691025 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5879-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9163753606639172 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5879-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8310817418566109 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5880-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952244471049231 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5880-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.956802554710235 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5881-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.960798837250594 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5881-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9465354606198432 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5882-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9286590154005822 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5882-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9480134206433448 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5883-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9147868670121702 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5883-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.864251711987854 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5884-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8411781195215121 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5885-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954088710642155 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5885-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9642845141703208 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5886-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9418387982409108 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5886-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9603531933375 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5888-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7833015575719591 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5888-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.857250085466395 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5889-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.959892116984702 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5889-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.955429062059046 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5890-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943175957940086 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5890-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.957401861339895 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5891-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958552996004666 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5891-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.784730379716976 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5892-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939854845953976 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5892-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943207232697625 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5893-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9450127079033208 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5893-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954281592474828 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5894-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94384107327716 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-BQ-5894-11A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.962778908504548 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-DW-5560-01A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.570939705750504 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-DW-5561-01A-01D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9608815904030028 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-EV-5901-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.763767466230009 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-EV-5902-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.941761078720518 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.1.lvl-3.TCGA-EV-5903-01A-11D-1590-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.957433281355622 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.10.lvl-3.TCGA-A4-A772-01A-11D-A341-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.933218931885632 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.10.lvl-3.TCGA-B3-A6W5-01A-12D-A341-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9426148111318792 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.10.lvl-3.TCGA-F9-A7VF-01A-11D-A341-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.92708264612134 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.10.lvl-3.TCGA-KV-A74V-01A-11D-A341-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.926293879050343 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.10.lvl-3.TCGA-O9-A75Z-01A-11D-A341-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9441494019753072 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.10.lvl-3.TCGA-SX-A71R-01A-12D-A341-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9383906494916328 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.10.lvl-3.TCGA-SX-A71S-01A-11D-A341-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954732631688966 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.10.lvl-3.TCGA-SX-A71U-01A-12D-A341-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954936226187643 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.10.lvl-3.TCGA-SX-A71V-01A-11D-A341-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94041540604216 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.10.lvl-3.TCGA-V9-A7HT-01A-11D-A341-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.947462397777228 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-A4-A7UZ-01A-12D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.937948876842436 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-IA-A83S-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.941782250168235 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-IA-A83T-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.945407650169634 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-IA-A83V-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951416684854152 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-IA-A83W-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9490440885146072 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-MH-A854-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.947141500857337 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-MH-A856-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9421965547071148 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-MH-A857-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.941244076673139 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-SX-A71W-01A-12D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9520556615120452 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-SX-A7SL-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9388560682891592 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-SX-A7SM-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9427956640064972 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-SX-A7SN-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9476394040713052 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-SX-A7SO-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9501980576397692 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-SX-A7SP-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7304983248620971 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.11.lvl-3.TCGA-Y8-A898-01A-11D-A356-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951059630815176 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-F9-A7Q0-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.897689806920323 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-F9-A8NY-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7040074221321719 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-G7-A8LB-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.892484551241989 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-G7-A8LC-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.933785506206174 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-G7-A8LD-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.922659580888062 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-G7-A8LE-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.918394238332632 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-J7-A8I2-01A-12D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.915671208679537 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-PJ-A8JU-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.925248493635391 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-SX-A7SQ-01A-12D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.92371299304111 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-SX-A7SR-01A-12D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8945587161929399 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-SX-A7SS-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9300613006427578 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-SX-A7SU-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.869218325718273 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-Y8-A895-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9314276018425808 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-Y8-A896-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.936530182627439 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.12.lvl-3.TCGA-Y8-A897-01A-11D-A369-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.913944647030488 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-4A-A93W-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.779599490048956 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-4A-A93X-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.936270523020116 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-4A-A93Y-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7881794072062049 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-B9-A8YH-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.933267903949344 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-B9-A8YI-01A-21D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927168548509029 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-GL-A9DC-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.600778078598207 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-GL-A9DD-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9438225269615592 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-GL-A9DE-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9192219869622528 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-WN-A9G9-01A-12D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8972399726438549 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-Y8-A8RY-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9322364649185793 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-Y8-A8RZ-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.923608868185962 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.13.lvl-3.TCGA-Y8-A8S1-01A-11D-A36Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9259256400423 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-2K-A9WE-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.935656540312195 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-2Z-A9J1-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.934977612067554 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-2Z-A9J2-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9216309012068052 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-2Z-A9J3-01A-12D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.941520504437488 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-2Z-A9J5-01A-21D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9393457311004472 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-2Z-A9J6-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948896308451531 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-2Z-A9J7-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939310580639933 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-F9-A97G-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.932594079571154 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-UN-AAZ9-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.936756245498747 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-UZ-A9PJ-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.932236667387204 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-UZ-A9PK-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.935473653571536 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-UZ-A9PL-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940343000259274 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-UZ-A9PM-01A-21D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.91413460181167 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-UZ-A9PN-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.937254010692684 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.14.lvl-3.TCGA-UZ-A9PO-01A-11D-A383-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939954051760443 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9J8-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.923115228973638 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JD-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.904947861232972 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JE-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.928276707527508 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JG-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.920587886727716 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JI-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.928870186661131 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JJ-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6331578051122491 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JK-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.922699504846195 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JL-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.926064975990307 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JN-01A-21D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6543691958451371 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JO-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.706470586830482 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JP-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.90777500555203 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JQ-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927412139131536 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JR-01A-12D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.929388016428467 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JS-01A-21D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.91747173348898 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-2Z-A9JT-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.908495398701645 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9JU-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948299401650352 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9JV-01A-12D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.920776254472356 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9JW-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.923581950034276 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9JY-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.917061081388558 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9JZ-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6580759375432901 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9K0-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9271665447072308 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9K3-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.91635436160232 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9K4-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.932256730419117 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9K8-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927239591226706 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9K9-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.906083714586895 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9KA-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9281200743425791 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9KC-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.700343263902879 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9KE-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.920714788678284 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9KF-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.875891382823091 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-5P-A9KH-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.913486668382037 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-P4-AAVL-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.911562456131341 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-P4-AAVM-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.920917294138786 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-P4-AAVO-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.928484949805826 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-UZ-A9PP-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9121065194349648 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-UZ-A9PQ-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9273994455565328 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-UZ-A9PR-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.921790144560803 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-UZ-A9PS-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.598805972229616 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-UZ-A9PS-05A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.885965983788785 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-UZ-A9PU-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.933895200196763 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-UZ-A9PV-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9382972563401508 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-UZ-A9PX-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.92897593184855 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-UZ-A9PZ-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9283171028324272 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.15.lvl-3.TCGA-WN-AB4C-01A-11D-A42K-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.885016035920673 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-5887-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.944921270786413 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-5887-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943300987870097 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7044-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952902036678768 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7044-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.959791755586428 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7045-01A-31D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.965441707010308 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7045-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.932150461880857 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7046-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9423367773990308 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7048-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.944771128314188 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7048-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9572041185414591 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7049-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9542718734359592 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7049-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9505052789612172 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7051-01A-12D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.960650889058409 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7051-11A-02D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.961008770161748 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7053-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.814522610300133 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7056-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6272065753805239 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7056-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.820043181629533 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7058-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.945158115381615 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7058-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9544102746423208 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7059-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949300152036 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7059-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.946677715162149 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7060-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.95080894024454 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7060-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9546749768506608 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7061-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.942690478494935 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7061-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.908538850848384 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7062-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9528284547958472 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-BQ-7062-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.947610385233924 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-DZ-6131-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958737383306186 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-DZ-6131-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954574380280332 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-DZ-6132-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952915662974426 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-DZ-6132-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950625176270857 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-DZ-6133-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948371003792861 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-DZ-6133-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.789747892666537 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-DZ-6134-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.957913834060864 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-DZ-6134-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958514133094755 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-DZ-6135-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9585539788390792 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-DZ-6135-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.942471932549338 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-G7-6789-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.935251732902294 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-G7-6790-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.949812727052525 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-G7-6792-01A-21D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951287427036471 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-G7-6793-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9419401695011008 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-G7-6795-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9376073516937908 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-G7-6796-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.961498264029534 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-G7-6797-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9558695275440658 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-GL-6846-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954019087481177 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-GL-6846-11A-01D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.957374849480966 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-HE-7128-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.946956519490703 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-HE-7129-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.962626438478573 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.2.lvl-3.TCGA-HE-7130-01A-11D-1963-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6263649897521071 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7286-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952795660816548 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7287-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.7223508517777841 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7288-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6074614712387939 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7288-11A-01D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.788080503655611 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7583-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9559000643359792 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7584-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.945875961003647 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7585-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.950504779933407 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7585-11A-01D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.946926170590182 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7732-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939476571323004 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7732-11A-01D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.951316661446735 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7734-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939492634664423 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-A4-7828-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.701155875515731 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-AL-7173-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.91257940204841 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-B1-7332-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.953315562783752 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-B9-7268-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.938691630070804 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-DW-7834-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9285249794224392 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-DW-7836-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94066498787348 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-DW-7837-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9227361901796592 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-DW-7838-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9449914109941558 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-DW-7839-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958018305232518 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-DW-7840-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.941522118782607 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.3.lvl-3.TCGA-DW-7841-01A-11D-2137-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9417491847499092 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.4.lvl-3.TCGA-A4-7915-01A-11D-2202-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.5745273266924971 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.4.lvl-3.TCGA-A4-7996-01A-11D-2202-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8574764931951501 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.4.lvl-3.TCGA-A4-7997-01A-11D-2202-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.933571714250167 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.4.lvl-3.TCGA-G7-7501-01A-11D-2202-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9188973108199632 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.4.lvl-3.TCGA-G7-7502-01A-11D-2202-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943327996593737 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.4.lvl-3.TCGA-GL-7966-01A-11D-2202-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8007684539196679 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-A4-8098-01A-11D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943834397868264 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-A4-8310-01A-11D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.941379728047072 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-A4-8311-01A-11D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9408459840983572 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-A4-8312-01A-11D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943751684056656 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-A4-8515-01A-11D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943155215081586 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-A4-8516-01A-11D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.948428702257238 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-A4-8517-01A-11D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.913476001605732 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-GL-8500-01A-11D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.958322512516564 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-IZ-8195-01A-31D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94373745601766 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-IZ-8196-01A-11D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.936917667292654 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.5.lvl-3.TCGA-J7-8537-01A-11D-2399-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.714613963519006 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.6.lvl-3.TCGA-A4-A48D-01A-11D-A254-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9356418108306328 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.6.lvl-3.TCGA-B1-A47M-01A-11D-A254-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.934959743608779 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.6.lvl-3.TCGA-B1-A47M-11A-11D-A254-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.93424325514123 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.6.lvl-3.TCGA-B1-A47N-01A-11D-A254-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.913967903337748 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.6.lvl-3.TCGA-B1-A47O-01A-11D-A254-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8879279776738491 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.6.lvl-3.TCGA-GL-A4EM-01A-11D-A254-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.92546542737737 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.6.lvl-3.TCGA-IA-A40U-01A-11D-A254-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.938298273663729 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.6.lvl-3.TCGA-IA-A40X-01A-11D-A254-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.575340043675448 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.6.lvl-3.TCGA-IA-A40Y-01A-11D-A254-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.934778208530519 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-A4-A4ZT-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.952664253497157 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-A4-A57E-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9323743627020408 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-AL-A5DJ-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.670348459371929 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-HE-A5NF-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.94029665629805 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-HE-A5NH-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.93137616695626 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-HE-A5NI-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.92159596389081 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-HE-A5NJ-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.930716561304192 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-HE-A5NK-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.916637106369364 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-HE-A5NL-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.928942150800742 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-MH-A55W-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.925448021956744 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-MH-A55Z-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9446396160576932 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-MH-A560-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.926095316071977 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-MH-A561-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.942261266732368 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.7.lvl-3.TCGA-MH-A562-01A-11D-A26R-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9064572869264772 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-A4-A5DU-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.912227742481271 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-A4-A5Y1-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9350690790888572 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-AT-A5NU-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.940164635293428 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-B9-A5W8-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.954702329953192 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-B9-A5W9-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.935687112098293 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-DW-7963-01B-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9429011775362408 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-GL-A59T-01A-21D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9340886929210708 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-P4-A5E6-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9369731830132207 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-P4-A5E7-01A-31D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.706525354965496 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-P4-A5E8-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9236950487026392 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-P4-A5EA-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.785350407794607 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-P4-A5EB-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.930895237306023 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-P4-A5ED-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.933956903097476 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-PJ-A5Z9-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.6633937188552579 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.8.lvl-3.TCGA-Q2-A5QZ-01A-11D-A28O-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9371650818843392 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-A4-A5XZ-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.8973187046593539 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-A4-A5Y0-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943218041053374 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-A4-A6HP-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.927229345000277 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-B1-A654-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9299250346858547 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-B1-A655-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9085762190360258 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-B1-A656-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9366432040709008 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-B9-A5W7-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9354883094623192 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-B9-A69E-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.920136530050172 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-G7-A4TM-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.930872889865177 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-IZ-A6M8-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.936331533040754 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-IZ-A6M9-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.93809329781972 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_KIRP.HumanMethylation450.9.lvl-3.TCGA-KV-A6GD-01A-11D-A31Y-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.943305044710293 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_SARC.HumanMethylation450.12.lvl-3.TCGA-WK-A8XT-01A-11D-A37D-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.9434556588232 13338 -------------------------------------------------------------------------------- Adding jhu-usc.edu_SARC.HumanMethylation450.3.lvl-3.TCGA-HB-A3YV-01A-11D-A24W-05.gdc_hg38.txt -------------------------------------------------------------------------------- 0.939336645615102 13338
Find FH gene index¶
Here we googled ensembl ID of FH, finding it to be: ENSG00000091483.
Now we just find the index of that gene in the ID column. Since TCGA gives use the data in terms of the exact version ID we need to first remove the .X from each name.
In [6]:
fh_idx = None
i = 0
for g in df[gene_name].values:
if g == 'FH':
print(g)
fh_idx = i
i += 1
print(i)
FH 56498
Visualise FH across the samples¶
1) Accross all KIRP samples separated by normal vs tumour
2) Across all KIRC samples separated by normal vs tumour
3) Across KIRP demographics
4) Across KIRC demographics
Here you can choose to log2 + 1 the data or just keep the counts. This saves the data to disc as well.
In [ ]:
project_folder = ''
output_folder = f'{project_folder}data/'
"""
Add annotations from the paper.
https://www.sciencedirect.com/science/article/pii/S2211124716301279
"""
RCC_annotations = f'{project_folder}MultilevelGenomicsBasedRCCTaxonomy_supp.xlsx'
# Open the excel file and read in the specific sheet that has the annotation information
sheet = 'By patient'
annot_df = pd.read_excel(io=RCC_annotations, sheet_name=sheet, header=3)
patient_names = annot_df['Patient tumor'].values
subtypes = annot_df['final subtype call'].values
# We want to join the subtypes with the patients
annotated_df = pd.DataFrame()
annotated_df[gene_name] = df[gene_name].values
i = 0
for patient in patient_names:
for c in df:
if patient[:-3] in c and ('htseq.counts' in c or 'HumanMethylation450' in c):
annotated_df[f'{subtypes[i]}_{c}'] = df[c].values
i += 1
In [ ]:
df = df.fillna(0)
Visualise the data¶
1) Create the boxplots and historgams of the vis.In [9]:
# Also make one with just Pe2 and just cimp
pe2_df = annotated_df[[gene_name] + [s for s in annotated_df.columns if 'P-e.2' in s]]
cimp_df = annotated_df[[gene_name] + [s for s in annotated_df.columns if 'P.CIMP-e' in s]]
In [10]:
dfs = [annotated_df, pe2_df, cimp_df]
labels = ['kirp', 'kirp-Pe2', 'kirp-Cimp']
label_i = 0
for d in dfs:
normal_fh = []
tumour_fh = []
values = d.values[fh_idx]
c_i = 0
cond_labels = []
cond_values = []
for c in d.columns:
if 'counts' in c:
if 'Normal' in c:
normal_fh.append(np.log2(values[c_i] + 1))
cond_labels.append('Normal')
cond_values.append(np.log2(values[c_i] + 1))
elif 'PrimaryTumor' in c:
tumour_fh.append(np.log2(values[c_i] + 1))
cond_labels.append('Tumour')
cond_values.append(np.log2(values[c_i] + 1))
c_i += 1
plt.hist(tumour_fh, bins=20, alpha=0.6, color='r')
plt.hist(normal_fh, bins=10, alpha=0.6, color='b')
plt.savefig(f'{output_folder}histogram_{labels[label_i]}.png')
plt.title(f'Histogram of {labels[label_i]}')
plt.show()
box_df = pd.DataFrame()
box_df['Condition'] = cond_labels
box_df['log2 counts'] = cond_values
# Let's also just make a box plot as well to see if there is a sig diff
ax = sns.boxplot(data=box_df, x='Condition', y='log2 counts', order=['Tumour', 'Normal'], boxprops=dict(alpha=.7))
plt.title(f'Boxplot of {labels[label_i]}')
add_stat_annotation(ax, data=box_df, x='Condition', y='log2 counts', order=['Tumour', 'Normal'],
box_pairs=[("Tumour", "Normal")],
test='Mann-Whitney', text_format='star', loc='inside', verbose=2)
ax.artists[0].set_facecolor('r')
ax.artists[1].set_facecolor('b')
sns.swarmplot(data=box_df, x='Condition', y='log2 counts', order=['Tumour', 'Normal'],
size=8, linewidth=0, color="lightgrey", edgecolor="gray", alpha=0.8)
plt.savefig(f'{output_folder}boxplot_{labels[label_i]}.png')
plt.show()
label_i += 1
p-value annotation legend: ns: 5.00e-02 < p <= 1.00e+00 *: 1.00e-02 < p <= 5.00e-02 **: 1.00e-03 < p <= 1.00e-02 ***: 1.00e-04 < p <= 1.00e-03 ****: p <= 1.00e-04 Tumour v.s. Normal: Mann-Whitney-Wilcoxon test two-sided with Bonferroni correction, P_val=3.920e-31 U_stat=1.528e+04
p-value annotation legend: ns: 5.00e-02 < p <= 1.00e+00 *: 1.00e-02 < p <= 5.00e-02 **: 1.00e-03 < p <= 1.00e-02 ***: 1.00e-04 < p <= 1.00e-03 ****: p <= 1.00e-04 Tumour v.s. Normal: Mann-Whitney-Wilcoxon test two-sided with Bonferroni correction, P_val=1.316e-02 U_stat=1.330e+02
p-value annotation legend: ns: 5.00e-02 < p <= 1.00e+00 *: 1.00e-02 < p <= 5.00e-02 **: 1.00e-03 < p <= 1.00e-02 ***: 1.00e-04 < p <= 1.00e-03 ****: p <= 1.00e-04 Tumour v.s. Normal: Mann-Whitney-Wilcoxon test two-sided with Bonferroni correction, P_val=6.295e-02 U_stat=2.600e+01
In [12]:
pe2_df.to_csv('data/P-e.2_TCGA.RNA.DNAMethylation.csv')
In [2]:
pe2_df = pd.read_csv('data/annotated-rna_kirp-Pe2_20200814.csv')
pe2_df
Out[2]:
| gene_id | gene_name | FHgrt11.8_P-e.2_TCGA-KIRC_PrimaryTumor_male_blackorafricanamerican_1_htseq.counts_735_TCGA-KIRC_TCGA-A3-3313_2671dda7-926b-4b95-9b0c-5ebe9a40f0c2 | FHgrt11.8_P-e.2_TCGA-KIRC_PrimaryTumor_male_blackorafricanamerican_2_htseq.counts_--_TCGA-KIRC_TCGA-AK-3456_7b71cfe6-4fdd-4c2b-9b46-d7589c896174 | FHleq11.8_P-e.2_TCGA-KIRC_PrimaryTumor_female_blackorafricanamerican_1_htseq.counts_51_TCGA-KIRC_TCGA-B2-4098_6d9015d6-2470-4ebb-8e07-360cde9ab13f | FHgrt11.8_P-e.2_TCGA-KIRC_SolidTissueNormal_female_white_4_htseq.counts_552_TCGA-KIRC_TCGA-CJ-5681_48a60ec9-abe8-4c67-907d-eefd97b7a107 | FHgrt11.8_P-e.2_TCGA-KIRC_PrimaryTumor_female_white_4_htseq.counts_552_TCGA-KIRC_TCGA-CJ-5681_c3641a4d-1af6-474a-9313-4d1877b69bd4 | FHgrt11.8_P-e.2_TCGA-KIRC_PrimaryTumor_female_white_1_htseq.counts_--_TCGA-KIRC_TCGA-B4-5835_86c8062c-ae80-45c6-a35b-591043a9649d | FHgrt11.8_P-e.2_TCGA-KIRC_PrimaryTumor_female_blackorafricanamerican_1_htseq.counts_--_TCGA-KIRC_TCGA-B8-A54E_e29ee40c-a51c-490e-b29e-d0d1c12de8ac | FHgrt11.8_P-e.2_TCGA-KIRC_PrimaryTumor_female_blackorafricanamerican_1_htseq.counts_--_TCGA-KIRC_TCGA-6D-AA2E_651d7063-0803-459e-b03a-b2c81ddf87a5 | ... | FHleq11.8_P-e.2_TCGA-KIRP_PrimaryTumor_male_white_1_htseq.counts_--_TCGA-KIRP_TCGA-Y8-A8S1_113e20dd-1cea-4ae6-95b1-8c17f5b36f88 | FHgrt11.8_P-e.2_TCGA-KIRP_PrimaryTumor_male_asian_3_htseq.counts_--_TCGA-KIRP_TCGA-F9-A97G_1ae69dce-655a-4175-b175-d513e8a069cc | FHgrt11.8_P-e.2_TCGA-KIRP_PrimaryTumor_male_white_1_htseq.counts_--_TCGA-KIRP_TCGA-2Z-A9JD_c02afc0a-11c5-4fcc-8986-287d79875b19 | FHgrt11.8_P-e.2_TCGA-KIRP_PrimaryTumor_female_blackorafricanamerican_1_htseq.counts_--_TCGA-KIRP_TCGA-2Z-A9JO_68296760-4635-4a8e-bafb-839aef7b2b75 | FHleq11.8_P-e.2_TCGA-KIRP_PrimaryTumor_female_white_1_htseq.counts_589_TCGA-KIRP_TCGA-5P-A9K9_8e994ca2-33c6-4ff3-9028-caaee46b93c9 | FHgrt11.8_P-e.2_TCGA-KIRP_PrimaryTumor_female_white_1_htseq.counts_--_TCGA-KIRP_TCGA-5P-A9KC_1e43f447-863c-4de8-a607-0fd210444de7 | FHleq11.8_P-e.2_TCGA-KIRP_PrimaryTumor_male_white_1_htseq.counts_--_TCGA-KIRP_TCGA-P4-AAVO_49be8b02-bb76-49a4-869b-5995a59ec10c | FHgrt11.8_P-e.2_TCGA-KIRP_PrimaryTumor_male_blackorafricanamerican_3_htseq.counts_2624_TCGA-KIRP_TCGA-UZ-A9PQ_a8813427-dfd6-416a-8a06-ffcad7cd4e16 | FHgrt11.8_P-e.2_TCGA-KIRP_PrimaryTumor_female_white_1_htseq.counts_--_TCGA-KIRP_TCGA-UZ-A9Q1_af77b60e-93d7-45af-bfd9-879078338349 | FHgrt11.8_P-e.2_TCGA-KIRP_PrimaryTumor_female_white_1_htseq.counts_--_TCGA-KIRP_TCGA-WN-AB4C_ee82feda-b712-4432-91f6-3dfa9d5dccbb | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | ENSG00000000003.13 | TSPAN6 | 3225 | 4059 | 2020 | 4104 | 2974 | 10472 | 2379 | 2332 | ... | 1804 | 3918 | 2006 | 2830 | 4114 | 3125 | 3467 | 2603 | 4053 | 2079 |
| 1 | ENSG00000000005.5 | TNMD | 0 | 15 | 0 | 14 | 0 | 12 | 0 | 1 | ... | 0 | 4 | 0 | 3 | 27 | 1 | 1 | 1 | 6 | 0 |
| 2 | ENSG00000000419.11 | DPM1 | 1490 | 985 | 958 | 1420 | 1472 | 1726 | 1927 | 1107 | ... | 695 | 1599 | 1153 | 1238 | 1445 | 1272 | 1011 | 1609 | 1258 | 449 |
| 3 | ENSG00000000457.12 | SCYL3 | 832 | 547 | 480 | 625 | 829 | 780 | 757 | 455 | ... | 175 | 656 | 415 | 313 | 403 | 635 | 150 | 882 | 390 | 168 |
| 4 | ENSG00000000460.15 | C1orf112 | 258 | 125 | 131 | 272 | 197 | 521 | 903 | 126 | ... | 61 | 143 | 91 | 76 | 284 | 167 | 36 | 203 | 83 | 47 |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 56535 | ENSG00000281904.1 | AC233263.6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | ... | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 8 | 0 | 0 |
| 56536 | ENSG00000281909.1 | HERC2P7 | 1 | 0 | 2 | 0 | 1 | 0 | 0 | 0 | ... | 0 | 3 | 1 | 0 | 1 | 0 | 0 | 2 | 0 | 0 |
| 56537 | ENSG00000281910.1 | SNORA50A | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | ... | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 |
| 56538 | ENSG00000281912.1 | LINC01144 | 112 | 25 | 39 | 70 | 344 | 42 | 36 | 99 | ... | 50 | 18 | 54 | 196 | 47 | 35 | 48 | 31 | 65 | 135 |
| 56539 | ENSG00000281920.1 | AC007389.5 | 5 | 1 | 10 | 6 | 3 | 0 | 6 | 7 | ... | 4 | 1 | 4 | 4 | 2 | 6 | 2 | 2 | 2 | 6 |
56540 rows × 60 columns
Set samples to be FH deficient or not¶
1) Based on the above boxplots we can choose a stricter cutoff of 10, or a more
relaxed cutoff of 11.
2) Run the cutoff for each dataframeIn [ ]:
from scipy.stats import iqr
# Keep track of the patient IDs so that we can map this to our DNA methylation data
fh_deficient_patients = {}
fh_normal_patients = {}
for label in labels:
fh_deficient_patients[label] = []
fh_normal_patients[label] = []
label_i = 0
for d in dfs:
values = d[[s for s in d.columns if 'Normal' in s or 'Primary' in s and 'counts' in s]].values[fh_idx]
tumour_values = d[[s for s in d.columns if 'Primary' in s and 'counts' in s]].values[fh_idx]
c_i = 0
cond_labels = []
cond_values = []
new_df = pd.DataFrame()
new_df[gene_name] = d[gene_name].values
cutoff = np.percentile(tumour_values, 25, interpolation='midpoint')
log2_cutoff = round(np.log2(cutoff + 1), 1)
print(log2_cutoff)
for c in d.columns:
fh_value = values[c_i]
if 'counts' in c:
if 'Normal' in c or 'PrimaryTumor' in c:
if fh_value > cutoff:
new_df[f'FHgrt{log2_cutoff}_{c}'] = d[c].values
# Add this patient ID to the deficient group
fh_normal_patients[labels[label_i]].append(c.split('_')[-2])
else:
new_df[f'FHleq{log2_cutoff}_{c}'] = d[c].values
# Add this patient ID to the deficient group
fh_deficient_patients[labels[label_i]].append(c.split('_')[-2])
c_i += 1
# Save dataframe
# api.u.save_df(new_df, api.u.generate_label([output_folder, f'annotated-rna-meth_{labels[label_i]}'],'.csv'))
label_i += 1
Look at the FH expression and other expressions¶
Validate that our grouping is correct.
In [12]:
import pandas as pd
# Read in the annotated dataframe
pe2_df = pd.read_csv('data/annotated-rna_kirp-Pe2_20200814.csv')
fh_df = pe2_df[pe2_df['gene_name'] == 'FH']
fh_df
values = []
labels = []
states = []
for c in fh_df.columns:
if 'TCGA' in c:
labels.append(c.split('_')[0])
values.append(hira[c].values[0])
states.append(c.split('_')[3])
In [13]:
import seaborn as sns
box_df = pd.DataFrame()
box_df['RNA'] = np.log2(np.array(values) + 1)
box_df['FH'] = labels
box_df['cond'] = states
# Here we see that low FH is low
ax = sns.boxplot(data=box_df, x='FH', y='RNA', hue='cond', boxprops=dict(alpha=.7))
sns.swarmplot(data=box_df, x='FH', y='RNA',
size=8, linewidth=0, color="lightgrey", edgecolor="gray", alpha=0.8)
Out[13]:
<AxesSubplot:xlabel='FH', ylabel='RNA'>
In [24]:
import seaborn as sns
hira = pe2_df[pe2_df['gene_name'] == 'HIRA']
values = []
labels = []
states = []
for c in hira.columns:
if 'TCGA' in c:
labels.append(c.split('_')[0])
values.append(hira[c].values[0])
states.append(c.split('_')[3])
box_df = pd.DataFrame()
box_df['RNA'] = np.log2(np.array(values) + 1)
box_df['HIRA'] = labels
box_df['cond'] = states
ax = sns.boxplot(data=box_df, x='HIRA', y='RNA', hue='cond', boxprops=dict(alpha=.7))
sns.swarmplot(data=box_df, x='HIRA', y='RNA',
size=8, linewidth=0, color="lightgrey", edgecolor="gray", alpha=0.8)
Out[24]:
<AxesSubplot:xlabel='HIRA', ylabel='RNA'>
In [25]:
import seaborn as sns
from statannot import add_stat_annotation
values = []
labels = []
states = []
for c in hira.columns:
if 'TCGA' in c:
labels.append(c.split('_')[0])
values.append(hira[c].values[0])
states.append(c.split('_')[3])
box_df = pd.DataFrame()
box_df['RNA'] = np.log2(np.array(values) + 1)
box_df['HIRA'] = labels
box_df['cond'] = states
box_df = box_df[box_df['cond'] == 'PrimaryTumor']
ax = sns.boxplot(data=box_df, x='HIRA', y='RNA', boxprops=dict(alpha=.7))
# sns.swarmplot(data=box_df, x='HIRA', y='RNA',
# size=8, linewidth=0, color="lightgrey", edgecolor="gray", alpha=0.8)
add_stat_annotation(ax, data=box_df, x='HIRA', y='RNA', box_pairs = [('FHgrt11.8', 'FHleq11.8')],
test='Mann-Whitney', text_format='star', loc='outside', verbose=2)
p-value annotation legend: ns: 5.00e-02 < p <= 1.00e+00 *: 1.00e-02 < p <= 5.00e-02 **: 1.00e-03 < p <= 1.00e-02 ***: 1.00e-04 < p <= 1.00e-03 ****: p <= 1.00e-04 FHgrt11.8 v.s. FHleq11.8: Mann-Whitney-Wilcoxon test two-sided with Bonferroni correction, P_val=5.618e-03 U_stat=3.240e+02
Out[25]:
(<AxesSubplot:xlabel='HIRA', ylabel='RNA'>, [<statannot.StatResult.StatResult at 0x7fcde8673518>])
